Reference

Adams MD, Kelly JM, Gocayne JD, et al. (1991) Complementary DNA sequencing: expressed sequence tags and human genome project. Science 252: 651-1656

Barabino SM and Keller W (1999) Last but not least: regulated poly(A) tail formation. Cell, 99:9-11

Beaudoing E, Gautheret D (2001) Identification of alternate polyadenylation sites and analysis of their tissue distribution using EST data. Genome Res. 11:1520-1526

Beffa R and Meins F Jr (1996) Pathogenesis-related functions of plant beta-1,3-glucanases investigates by antisense transformation: a review. Gene 179: 97-103

Bishop JO, Morton JG, Rosbash M et al. (1974) Three abundance classes in HeLa cell messenger RNA. Nature. 250(463): 199-204

Cahoon EB, Carlson TJ, Ripp KG, et al. (1999) Biosynthetic origin of conjugated double bonds: production of fatty acid components of high-value drying oils in transgenic soybean embyos. Proc Natl. Acad. Sci. USA 96: 12935-12940

Chen F, MacDonald CC and Wilusz J (1995) Cleavage site determinants in the mammalian polyadenylation signal. Nucl. Acids Res. 23:2614-2620

Conklin D,Jonassen I, Aasland R, et al. (2002) Association of nucleotide patterns with gene function classes: application to human 3' untranslated sequences. Bioinformatics 18:182-189

Borges MF, Spohn PK, Coulson AS (1997) Using 3′ untranslated sequences to identify differentially expressed genes in Leishmania. Gene 196: 159-164

Dangl J and Jones JDG (2001) Plant pathogens and integrated defence responses to pathogens. Nature 411: 826-834

Dixon RA (2001) Natural products and plant disease resistance. Nature 411: 843-847

Donson J, Fang YW, Santo GE et al. (2002) Comprehensive gene expression analysis by transcript profiling. Plant Mol. Biol. 48: 75-97.

Durbin R, Eddy S, Krogh A, et al. (1998) Biological sequence analysis-probabilistic models of proteins and nucleic acids. Cambridge University Press, Cambridge, UK

Ewing RM, Kahla AB, Poirot O, et al. (1999) Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression. Genome Res. 9:950-959

Fernandes J, Brendel V, Gai X, et al. (2002) Comparison of RNA expression profiles based on maize expressed sequence tag frequency analysis and micro-array hybridization1. Plant Physiol. 128:896-910

Goff SA, Ricke D, Lan TH, et al. (2002) A Draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296: 92-100

Goldberg RB (2001) From cot curves to genomics. how gene cloning established new concepts in plant biology. Plant Physiol. 125: 4-8

Graber JH, Cantor CR., Mohr SC, et al. (1999) In silico detection of control signals: mRNA 3-end-processing sequences in diverse species. PNAS 96:14055-14060

He C, Fong SH, Yang D, et al. (1999) BWMK1, a Novel MAP Kinase Induced by Fungal Infection and Mechanical Wounding in Rice. MPMI 12:1064-1073

Iseli C, Stevenson BJ, de Souza SJ, et al. (2002) Long-range heterogeneity at the 3 ' ends of human mRNAs. Genome Res. 12: 1068-1074

Kan ZY, Rouchka EC, Gish WR, et al. (2001) Gene structure prediction and alternative splicing analysis using genomically aligned ESTs. Genome Res. 11:889-900

Kwon SI, An CS (2001) Molecular cloning, characterization and expression analysis of a catalase cDNA from hot pepper (Capsicum annuum L.). Plant Sci. 160 : 961-969

Lee SH, Kim BG, Kim KJ, et al. (2002) Comparative analysis of sequences expressed during the liquid-cultured mycelia and fruit body stages of Pleurotus ostreatus. Fungal Genet Biol 35: 115-134

Li Q,Hunt AG (1995) A near upstream element in a plant polyadenylation signal consists of more than six bases. Plant Mol. Biol. 28: 927-934

Li XY, Qian Q, Fu ZM, et al. (2003) Control of tillering in rice. Nature 422:618 - 621

Lofftus SK, Chen Y, Gooden G, et al. (1999) Informative selection of a neural crestmelanocyte cDNA set for microarray analysis . Proc. Natl. Acad. Sci. USA 96: 9277-9280

Maurer F, Murone M, Stutz E (1996) The tuf gene family of soybean: structure and differential transcription. Plant Sci. 117: 83-93

Mekhedov S, Martinnez de Ilarduya O, Ohlrogge J (2000) Towards a functional catalog of the plant genome: a survey of genes for lipid biosynthesis. Plant Physiol. 122: 389-401

Mignone F, Gissi C, Liuni S, et al. (2002) Untranslated Regions of mRNAs. Genome Biol. 3: reviews 0004.1-0004.10

Moore AE, Stone BA (1972) Effect of infection with TMV and other viruses on the level of a -1,3-glucan hydrolase in leaves of Nicotiana glutinosa. Virology 50: 791-798

Ohlrogge J, Benning C. (2000) Unraveling plant metabolism by EST analysis. Curr. Opin. Plant Biol. 3:224-228

Okano K, Shimada T, Mita K, et al. (2001) Comparative expressed-sequence-tag analysis of differential gene expression profiles in BmNPV-infected BmN cells. Virology 282: 348-356

Okubo K, Hori N, Matoba R, et al. (1992) Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression. Nature Genet. 2: 173-179

Pauws E, van Kampen AHC, van de Graaf SAR, et al. (2001) Heterogeneity in polyadenylation cleavage sites in mammalian mRNA sequences: implications for SAGE analysis. Nucl. Acids Res. 29:1690-1694

Pesole G and Liuni S (1999) "Internet resources for the functional analysis of 5' and 3' untranslated regions of eukaryotic mRNA". Trends Genet. 15:378

Qutob D, Hraber PT, Sobral BW, et al. (2000) Comparative analysis of expressed sequences in Phytophthora sojae. Plant Physiol. 123 : 243-253

Regnier Mi, Lifanov A, and Makeev V (2000) Three variations on word counting. GCB'00 Bioinformatics (http://algo.inria.fr/regnier/Makeev/)

Rothnie H (1996) Plant mRNA 3'-end formation. Plant Mol. Biol. 32:43-61

Rothnie H, Reid J and Hohn T (1994) The contribution of AAUAAA and the upstream element UUUGUA to the efficiency of mRNA 3'-end formation in plants. EMBO J. 1:2200～2210

Runnsley SD, Gloidek A, Adams MD, et al. (1996) The construction of Arabidopsis expressed sequence tags assemblies: a new resource to facilitate gene identification. Plant Physiol. 112:1177-1183

Sasaki T, Song J, Koga-Ban Y, et al. (1994) Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library. Plant J. 6:615-624

Sasaki T, Yano M, Kurata N, et al. (1996) The Japanese rice genome research program. Genome Res. 6: 661-666

Serageldin I (2002) THE RICE GENOME: world poverty and hunger--the challenge for science. Science 296: 54-58

Shoemaker DD, Linsley PS (2002) Recent developments in DNA microarrays. Curr Opin Microbiol. 5:334-337.

van Helden J, del Olmo M, Perez-Ortin JE (2000) Statistical analysis of yeast genomic downstream sequences reveals putative polyadenylation signals. Nucl. Acids Res. 28: 1000-1010

Wu J, Maehara T, Shimokawa T, et al. (2002) A comprehensive rice transcript map containing 6591 expressed sequence tag sites. Plant Cell 14:525-535.

Wu J., Yamamoto S., Machara T. et al. (2000) A comprehensive map of rice expressed sequence tags (ESTs): it's characteristics and application to genome analyisis. 6 th International congress of Plant Molecular Biology, Supplement to reporter 18:S1-92

Yamamoto K, Sasaki T. (1997) Large-scale EST sequencing in rice. Plant Mol. Biol. 35: 135-144

Yazaki J, Kishimoto N, Nakamura K, et al. (2000) Embarking on rice functional genomics via cDNA microarray: Use of 3'UTR probes for specific gene expression analysis. DNA Res. 7: 367-370

Yu J, Hu S, Wang J, et al. (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296: 79-92

Zhan F, Schichman S, Tian E, et al. (2000) Comparative gene expression profiles of multiple myeloma and chronic lymphocytic leukemia show distinct clusters of differentially expressed genes. BLOOD 96 : 3012

Zhao J, Hyman L, Moore C (1999) Formation of mRNA 39 Ends in Eukaryotes: Mechanism, Regulation, and Interrelationships with Other Steps in mRNA Synthesis. Microbio. Mol. Bio. Rev. 63: 405-445

Zheng CC, Wen FJ (2000) The mechanism of mRNA 3'-end processing in higher plants. J. Shandong Univ. Nat. Sci. 31:110-114

Zhu Q, Dabi T, Beeche A, et al. (1995) Cloning and properties of a rice gene encoding phenylalanine ammonia-lyase. Plant Mol. Biol. 29:535-50